Plot the pseudotime ordering of clusters using igraph tools.
PlotLineage( network, node_color = NULL, alpha_color = 1, exaggerate = TRUE, weight_scaler = 0.2, arrow_scaler = 0.8 )
network | an igraph network with weighted edges corresponding to the pseudotime distance |
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node_color | an optional vector of colors for node labeling. If null then the nodes are all colored black |
alpha_color | the gradient of the nodes |
exaggerate | whether to exponentiate then linearly scale the edge weights, thus emphasizing their differences |
weight_scaler | the weight scaler for edges |
arrow_scaler | the arrow width scaler for edges |
nothing