Updates
Demo SoptSC at
vignette("Joost_et_al")Read the SoptSC article in NAR
SoptSC is also available as a MATLAB package here
Installation
install.packages("devtools")
library(devtools)
install_github("mkarikom/RSoptSC")Features
Inference of cell-cell communication between single cells
Integration of multiple analyses in a consistent mathematical framework: clustering, marker genes, pseudotime, and lineage inference
Cell-cell similarity matrix construction to improve clustering
NMF-based marker gene identification
Prediction of the number of clusters present (via eigengap properties of the similarity matrix)
Prediction of the initial cell in pseudotime
Documentation
Full details of RSoptSC and examples are available here.
